{"id":608717,"date":"2023-02-16T20:49:20","date_gmt":"2023-02-17T02:49:20","guid":{"rendered":"https:\/\/news.sellorbuyhomefast.com\/index.php\/2023\/02\/16\/computational-framework-decomposes-and-annotates-single-cell-and-spatial-omics\/"},"modified":"2023-02-16T20:49:20","modified_gmt":"2023-02-17T02:49:20","slug":"computational-framework-decomposes-and-annotates-single-cell-and-spatial-omics","status":"publish","type":"post","link":"https:\/\/newsycanuse.com\/index.php\/2023\/02\/16\/computational-framework-decomposes-and-annotates-single-cell-and-spatial-omics\/","title":{"rendered":"Computational framework decomposes and annotates single-cell and spatial omics"},"content":{"rendered":"<p>Science &#038; Nature <\/p>\n<div>\n<header>\n<ul data-test=\"article-identifier\">\n<li data-test=\"article-category\">Research Briefing<\/li>\n<li><a href=\"http:\/\/www.nature.com\/#article-info\" data-track=\"click\" data-track-action=\"publication date\" data-track-label=\"link\">Published: <time datetime=\"2023-02-16\">16 February 2023<\/time><\/a><\/li>\n<\/ul>\n<ul data-test=\"authors-list\" data-component-authors-activator=\"authors-list\"><\/ul>\n<p data-container-section=\"info\">\n<p>    <a data-test=\"journal-link\" href=\"http:\/\/www.nature.com\/nbt\"><i data-test=\"journal-title\">Nature Biotechnology<\/i><\/a><\/p>\n<p>                         (<span data-test=\"article-publication-year\">2023<\/span>)<a href=\"http:\/\/www.nature.com\/#citeas\" data-track=\"click\" data-track-action=\"cite this article\" data-track-label=\"link\">Cite this article<\/a>\n                    <\/p>\n<\/header>\n<div data-component=\"article-subject-links\">\n<h3>Subjects<\/h3>\n<\/p><\/div>\n<\/p><\/div>\n<div>\n<p>We developed TACCO, a versatile and efficient computational annotation framework, leveraging growing single-cell and spatial omics data to identify cell types and states, decipher molecular and cellular tissue structure, and resolve differentiation trajectories.<\/p>\n<div>\n<p>This is a preview of subscription content, <a href=\"https:\/\/wayf.springernature.com?redirect_uri=https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41587-023-01658-2\" data-track=\"click\" data-track-action=\"institution access preview subscription\" data-track-label=\"link\">access via your institution<\/a><\/p>\n<\/p><\/div>\n<h2 id=\"access-options\">Access options<\/h2>\n<section>\n<div>\n<p>Subscribe to Nature+<\/p>\n<p>Get immediate online access to Nature and 55 other Nature journal<\/p>\n<\/div>\n<div>\n<p>Subscribe to Journal<\/p>\n<p>Get full journal access for 1 year<\/p>\n<div>\n<p id=\"subscription-price\">$99.00<\/p>\n<p>only $8.25 per issue<\/p>\n<\/div>\n<p>All prices are NET prices.<br \/> VAT will be added later in the checkout.<br \/>Tax calculation will be finalised during checkout.<\/p>\n<\/div>\n<div>\n<p>Buy article<\/p>\n<p>Get time limited or full article access on ReadCube.<\/p>\n<p id=\"readcube-price\">$32.00<\/p>\n<p>All prices are NET prices.<\/p>\n<\/div>\n<\/section>\n<nav>\n<h3>Additional access options:<\/h3>\n<ul>\n<li>\n            <a href=\"https:\/\/idp.nature.com\/authorize\/natureuser?client_id=grover&#038;redirect_uri=https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41587-023-01658-2\" data-track=\"click\" data-track-action=\"login\" data-track-category=\"article body\" data-track-label=\"link\">Log in<\/a>\n        <\/li>\n<li>\n            <a href=\"https:\/\/www.springernature.com\/gp\/librarians\/licensing\/license-options\" data-track=\"click\" data-track-action=\"learn-subscription\" data-track-category=\"article body\" data-track-label=\"link\">Learn about institutional subscriptions<\/a>\n        <\/li>\n<\/ul>\n<\/nav>\n<div data-test=\"figure\" data-container-section=\"figure\" id=\"figure-1\">\n<figure><figcaption><b id=\"Fig1\" data-test=\"figure-caption-text\">Fig. 1: TACCO annotates spatial genomics and single-molecule datasets.<\/b><\/figcaption><div><picture><source type=\"image\/webp\" ><img decoding=\"async\" src=\"http:\/\/media.springernature.com\/m312\/springer-static\/image\/art%3A10.1038%2Fs41587-023-01658-2\/MediaObjects\/41587_2023_1658_Fig1_HTML.png\" alt loading=\"lazy\" width=\"274\" height=\"312\"><\/picture><\/div>\n<\/figure>\n<\/div>\n<div data-enable-entitlement-checks>\n<div id=\"MagazineFulltextArticleBodySuffix\" aria-labelledby=\"Bib1\" data-title=\"References\">\n<h2 id=\"Bib1\">References<\/h2>\n<div data-container-section=\"references\" id=\"Bib1-content\">\n<ol data-track-component=\"outbound reference\">\n<li data-counter=\"1.\">\n<p id=\"ref-CR1\">Stuart, T. &#038; Satija, R. Integrative single-cell analysis. <i>Nat. Rev. Genet.<\/i> <b>20<\/b>, 257\u2013272 (2019). <b>This is a review article on integration of different data types at single-cell resolution.<\/b><\/p>\n<p><a data-track=\"click\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/s41576-019-0093-7\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fs41576-019-0093-7\" aria-label=\"Article reference 1\" data-doi=\"10.1038\/s41576-019-0093-7\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-action=\"cas reference\" href=\"http:\/\/www.nature.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1MXmtFKjtbs%3D\" aria-label=\"CAS reference 1\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&#038;db=PubMed&#038;dopt=Abstract&#038;list_uids=30696980\" aria-label=\"PubMed reference 1\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click\" data-track-action=\"google scholar reference\" data-track-label=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 1\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&#038;title=Integrative%20single-cell%20analysis&#038;journal=Nat.%20Rev.%20Genet.&#038;doi=10.1038%2Fs41576-019-0093-7&#038;volume=20&#038;pages=257-272&#038;publication_year=2019&#038;author=Stuart%2CT&#038;author=Satija%2CR\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<\/li>\n<li data-counter=\"2.\">\n<p id=\"ref-CR2\">Aldridge, S. &#038; Teichmann, S. A. Single cell transcriptomics comes of age. <i>Nat. Commun.<\/i> <b>11<\/b>, 4307 (2020). <b>This review article covers technological advancements and discoveries enabled by single-cell transcriptomics.<\/b><\/p>\n<p><a data-track=\"click\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/s41467-020-18158-5\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fs41467-020-18158-5\" aria-label=\"Article reference 2\" data-doi=\"10.1038\/s41467-020-18158-5\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-action=\"cas reference\" href=\"http:\/\/www.nature.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3cXhslWqtb%2FK\" aria-label=\"CAS reference 2\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&#038;db=PubMed&#038;dopt=Abstract&#038;list_uids=32855414\" aria-label=\"PubMed reference 2\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7453005\" aria-label=\"PubMed Central reference 2\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click\" data-track-action=\"google scholar reference\" data-track-label=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 2\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&#038;title=Single%20cell%20transcriptomics%20comes%20of%20age&#038;journal=Nat.%20Commun.&#038;doi=10.1038%2Fs41467-020-18158-5&#038;volume=11&#038;publication_year=2020&#038;author=Aldridge%2CS&#038;author=Teichmann%2CSA\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<\/li>\n<li data-counter=\"3.\">\n<p id=\"ref-CR3\">Palla, G. et al. Spatial components of molecular tissue biology. <i>Nat. Biotechnol.<\/i> <b>40<\/b>, 308\u2013318 (2022). <b>This review article discusses computational methods for spatial molecular analysis.<\/b><\/p>\n<p><a data-track=\"click\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/s41587-021-01182-1\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fs41587-021-01182-1\" aria-label=\"Article reference 3\" data-doi=\"10.1038\/s41587-021-01182-1\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-action=\"cas reference\" href=\"http:\/\/www.nature.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38XjtFSit70%3D\" aria-label=\"CAS reference 1\"00>CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&#038;db=PubMed&#038;dopt=Abstract&#038;list_uids=35132261\" aria-label=\"CAS reference 1\"11>PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click\" data-track-action=\"google scholar reference\" data-track-label=\"link\" rel=\"nofollow noopener\" aria-label=\"CAS reference 1\"22 href=\"http:\/\/scholar.google.com\/scholar_lookup?&#038;title=Spatial%20components%20of%20molecular%20tissue%20biology&#038;journal=Nat.%20Biotechnol.&#038;doi=10.1038%2Fs41587-021-01182-1&#038;volume=40&#038;pages=308-318&#038;publication_year=2022&#038;author=Palla%2CG\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<\/li>\n<li data-counter=\"4.\">\n<p id=\"ref-CR4\">Peyre, G. &#038; Cuturi, M. Computational optimal transport: with applications to data science. <i>Found. Trends Mach. Learn.<\/i> <b>11<\/b>, 355\u2013607 (2019). <b>This paper reviews optimal transport theory, algorithmic foundations and applications for data science.<\/b><\/p>\n<p><a data-track=\"click\" rel=\"nofollow noopener\" data-track-label=\"10.1561\/2200000073\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1561%2F2200000073\" aria-label=\"CAS reference 1\"33 data-doi=\"10.1561\/2200000073\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click\" data-track-action=\"google scholar reference\" data-track-label=\"link\" rel=\"nofollow noopener\" aria-label=\"CAS reference 1\"44 href=\"http:\/\/scholar.google.com\/scholar_lookup?&#038;title=Computational%20optimal%20transport%3A%20with%20applications%20to%20data%20science&#038;journal=Found.%20Trends%20Mach.%20Learn.&#038;doi=10.1561%2F2200000073&#038;volume=11&#038;pages=355-607&#038;publication_year=2019&#038;author=Peyre%2CG&#038;author=Cuturi%2CM\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<\/li>\n<li data-counter=\"5.\">\n<p id=\"ref-CR5\">Avraham-Davidi, I. et al. &#8220;Integrative single cell and spatial transcriptomics of colorectal cancer reveals multicellular functional units that support tumor progression.&#8221; Preprint at <i>bioRxiv<\/i> <a href=\"https:\/\/doi.org\/10.1101\/2022.10.02.508492\">https:\/\/doi.org\/10.1101\/2022.10.02.508492<\/a> (2022). <b>TACCO integrates scRNA-seq and Slide-Seq to create a spatial map of healthy and dysplastic colon cellular ecosystems and their association with disease progression.<\/b><\/p>\n<\/li>\n<\/ol>\n<p><a data-track=\"click\" data-track-action=\"download citation references\" data-track-label=\"link\" rel=\"nofollow\" href=\"https:\/\/citation-needed.springer.com\/v2\/references\/10.1038\/s41587-023-01658-2?format=refman&#038;flavour=references\">Download references<\/a><\/p>\n<\/div>\n<\/div>\n<div id=\"additional-information-section\" data-title=\"Additional information\">\n<h2 id=\"additional-information\">Additional information<\/h2>\n<div id=\"additional-information-content\">\n<p><b>Publisher\u2019s note<\/b> Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.<\/p>\n<p><b>This is a summary of:<\/b> Mages, S. et al. TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics. <i>Nat. Biotechnol<\/i>. <a href=\"https:\/\/doi.org\/10.1038\/s41587-023-01657-3\">https:\/\/doi.org\/10.1038\/s41587-023-01657-3<\/a> (2023).<\/p>\n<\/div>\n<\/div>\n<div id=\"rightslink-section\" data-title=\"Rights and permissions\">\n<h2 id=\"rightslink\">Rights and permissions<\/h2>\n<\/div>\n<div id=\"article-info-section\" aria-labelledby=\"article-info\" data-title=\"About this article\">\n<h2 id=\"article-info\">About this article<\/h2>\n<div id=\"article-info-content\">\n<p><a data-crossmark=\"10.1038\/s41587-023-01658-2\" target=\"_blank\" rel=\"noopener\" href=\"https:\/\/crossmark.crossref.org\/dialog\/?doi=10.1038\/s41587-023-01658-2\" data-track=\"click\" data-track-action=\"Click Crossmark\" data-track-label=\"link\" data-test=\"crossmark\"><img loading=\"lazy\" decoding=\"async\" width=\"57\" height=\"81\" alt=\"Science &amp; Nature Verify currency and authenticity via CrossMark\" src=\"data:image\/svg+xml;base64,<svg height="81" width="57" xmlns="http://www.w3.org/2000/svg"><g fill="none" fill-rule="evenodd"><path d="m17.35 35.45 21.3-14.2v-17.03h-21.3" fill="#989898"/><path d="m38.65 35.45-21.3-14.2v-17.03h21.3" fill="#747474"/><path d="m28 .5c-12.98 0-23.5 10.52-23.5 23.5s10.52 23.5 23.5 23.5 23.5-10.52 23.5-23.5c0-6.23-2.48-12.21-6.88-16.62-4.41-4.4-10.39-6.88-16.62-6.88zm0 41.25c-9.8 0-17.75-7.95-17.75-17.75s7.95-17.75 17.75-17.75 17.75 7.95 17.75 17.75c0 4.71-1.87 9.22-5.2 12.55s-7.84 5.2-12.55 5.2z" fill="#535353"/><path d="m41 36c-5.81 6.23-15.23 7.45-22.43 2.9-7.21-4.55-10.16-13.57-7.03-21.5l-4.92-3.11c-4.95 10.7-1.19 23.42 8.78 29.71 9.97 6.3 23.07 4.22 30.6-4.86z" fill="#9c9c9c"/><path d="m.2 58.45c0-.75.11-1.42.33-2.01s.52-1.09.91-1.5c.38-.41.83-.73 1.34-.94.51-.22 1.06-.32 1.65-.32.56 0 1.06.11 1.51.35.44.23.81.5 1.1.81l-.91 1.01c-.24-.24-.49-.42-.75-.56-.27-.13-.58-.2-.93-.2-.39 0-.73.08-1.05.23-.31.16-.58.37-.81.66-.23.28-.41.63-.53 1.04-.13.41-.19.88-.19 1.39 0 1.04.23 1.86.68 2.46.45.59 1.06.88 1.84.88.41 0 .77-.07 1.07-.23s.59-.39.85-.68l.91 1c-.38.43-.8.76-1.28.99-.47.22-1 .34-1.58.34-.59 0-1.13-.1-1.64-.31-.5-.2-.94-.51-1.31-.91-.38-.4-.67-.9-.88-1.48-.22-.59-.33-1.26-.33-2.02zm8.4-5.33h1.61v2.54l-.05 1.33c.29-.27.61-.51.96-.72s.76-.31 1.24-.31c.73 0 1.27.23 1.61.71.33.47.5 1.14.5 2.02v4.31h-1.61v-4.1c0-.57-.08-.97-.25-1.21-.17-.23-.45-.35-.83-.35-.3 0-.56.08-.79.22-.23.15-.49.36-.78.64v4.8h-1.61zm7.37 6.45c0-.56.09-1.06.26-1.51.18-.45.42-.83.71-1.14.29-.3.63-.54 1.01-.71.39-.17.78-.25 1.18-.25.47 0 .88.08 1.23.24.36.16.65.38.89.67s.42.63.54 1.03c.12.41.18.84.18 1.32 0 .32-.02.57-.07.76h-4.36c.07.62.29 1.1.65 1.44.36.33.82.5 1.38.5.29 0 .57-.04.83-.13s.51-.21.76-.37l.55 1.01c-.33.21-.69.39-1.09.53-.41.14-.83.21-1.26.21-.48 0-.92-.08-1.34-.25-.41-.16-.76-.4-1.07-.7-.31-.31-.55-.69-.72-1.13-.18-.44-.26-.95-.26-1.52zm4.6-.62c0-.55-.11-.98-.34-1.28-.23-.31-.58-.47-1.06-.47-.41 0-.77.15-1.07.45-.31.29-.5.73-.58 1.3zm2.5.62c0-.57.09-1.08.28-1.53.18-.44.43-.82.75-1.13s.69-.54 1.1-.71c.42-.16.85-.24 1.31-.24.45 0 .84.08 1.17.23s.61.34.85.57l-.77 1.02c-.19-.16-.38-.28-.56-.37-.19-.09-.39-.14-.61-.14-.56 0-1.01.21-1.35.63-.35.41-.52.97-.52 1.67 0 .69.17 1.24.51 1.66.34.41.78.62 1.32.62.28 0 .54-.06.78-.17.24-.12.45-.26.64-.42l.67 1.03c-.33.29-.69.51-1.08.65-.39.15-.78.23-1.18.23-.46 0-.9-.08-1.31-.24-.4-.16-.75-.39-1.05-.7s-.53-.69-.7-1.13c-.17-.45-.25-.96-.25-1.53zm6.91-6.45h1.58v6.17h.05l2.54-3.16h1.77l-2.35 2.8 2.59 4.07h-1.75l-1.77-2.98-1.08 1.23v1.75h-1.58zm13.69 1.27c-.25-.11-.5-.17-.75-.17-.58 0-.87.39-.87 1.16v.75h1.34v1.27h-1.34v5.6h-1.61v-5.6h-.92v-1.2l.92-.07v-.72c0-.35.04-.68.13-.98.08-.31.21-.57.4-.79s.42-.39.71-.51c.28-.12.63-.18 1.04-.18.24 0 .48.02.69.07.22.05.41.1.57.17zm.48 5.18c0-.57.09-1.08.27-1.53.17-.44.41-.82.72-1.13.3-.31.65-.54 1.04-.71.39-.16.8-.24 1.23-.24s.84.08 1.24.24c.4.17.74.4 1.04.71s.54.69.72 1.13c.19.45.28.96.28 1.53s-.09 1.08-.28 1.53c-.18.44-.42.82-.72 1.13s-.64.54-1.04.7-.81.24-1.24.24-.84-.08-1.23-.24-.74-.39-1.04-.7c-.31-.31-.55-.69-.72-1.13-.18-.45-.27-.96-.27-1.53zm1.65 0c0 .69.14 1.24.43 1.66.28.41.68.62 1.18.62.51 0 .9-.21 1.19-.62.29-.42.44-.97.44-1.66 0-.7-.15-1.26-.44-1.67-.29-.42-.68-.63-1.19-.63-.5 0-.9.21-1.18.63-.29.41-.43.97-.43 1.67zm6.48-3.44h1.33l.12 1.21h.05c.24-.44.54-.79.88-1.02.35-.24.7-.36 1.07-.36.32 0 .59.05.78.14l-.28 1.4-.33-.09c-.11-.01-.23-.02-.38-.02-.27 0-.56.1-.86.31s-.55.58-.77 1.1v4.2h-1.61zm-47.87 15h1.61v4.1c0 .57.08.97.25 1.2.17.24.44.35.81.35.3 0 .57-.07.8-.22.22-.15.47-.39.73-.73v-4.7h1.61v6.87h-1.32l-.12-1.01h-.04c-.3.36-.63.64-.98.86-.35.21-.76.32-1.24.32-.73 0-1.27-.24-1.61-.71-.33-.47-.5-1.14-.5-2.02zm9.46 7.43v2.16h-1.61v-9.59h1.33l.12.72h.05c.29-.24.61-.45.97-.63.35-.17.72-.26 1.1-.26.43 0 .81.08 1.15.24.33.17.61.4.84.71.24.31.41.68.53 1.11.13.42.19.91.19 1.44 0 .59-.09 1.11-.25 1.57-.16.47-.38.85-.65 1.16-.27.32-.58.56-.94.73-.35.16-.72.25-1.1.25-.3 0-.6-.07-.9-.2s-.59-.31-.87-.56zm0-2.3c.26.22.5.37.73.45.24.09.46.13.66.13.46 0 .84-.2 1.15-.6.31-.39.46-.98.46-1.77 0-.69-.12-1.22-.35-1.61-.23-.38-.61-.57-1.13-.57-.49 0-.99.26-1.52.77zm5.87-1.69c0-.56.08-1.06.25-1.51.16-.45.37-.83.65-1.14.27-.3.58-.54.93-.71s.71-.25 1.08-.25c.39 0 .73.07 1 .2.27.14.54.32.81.55l-.06-1.1v-2.49h1.61v9.88h-1.33l-.11-.74h-.06c-.25.25-.54.46-.88.64-.33.18-.69.27-1.06.27-.87 0-1.56-.32-2.07-.95s-.76-1.51-.76-2.65zm1.67-.01c0 .74.13 1.31.4 1.7.26.38.65.58 1.15.58.51 0 .99-.26 1.44-.77v-3.21c-.24-.21-.48-.36-.7-.45-.23-.08-.46-.12-.7-.12-.45 0-.82.19-1.13.59-.31.39-.46.95-.46 1.68zm6.35 1.59c0-.73.32-1.3.97-1.71.64-.4 1.67-.68 3.08-.84 0-.17-.02-.34-.07-.51-.05-.16-.12-.3-.22-.43s-.22-.22-.38-.3c-.15-.06-.34-.1-.58-.1-.34 0-.68.07-1 .2s-.63.29-.93.47l-.59-1.08c.39-.24.81-.45 1.28-.63.47-.17.99-.26 1.54-.26.86 0 1.51.25 1.93.76s.63 1.25.63 2.21v4.07h-1.32l-.12-.76h-.05c-.3.27-.63.48-.98.66s-.73.27-1.14.27c-.61 0-1.1-.19-1.48-.56-.38-.36-.57-.85-.57-1.46zm1.57-.12c0 .3.09.53.27.67.19.14.42.21.71.21.28 0 .54-.07.77-.2s.48-.31.73-.56v-1.54c-.47.06-.86.13-1.18.23-.31.09-.57.19-.76.31s-.33.25-.41.4c-.09.15-.13.31-.13.48zm6.29-3.63h-.98v-1.2l1.06-.07.2-1.88h1.34v1.88h1.75v1.27h-1.75v3.28c0 .8.32 1.2.97 1.2.12 0 .24-.01.37-.04.12-.03.24-.07.34-.11l.28 1.19c-.19.06-.4.12-.64.17-.23.05-.49.08-.76.08-.4 0-.74-.06-1.02-.18-.27-.13-.49-.3-.67-.52-.17-.21-.3-.48-.37-.78-.08-.3-.12-.64-.12-1.01zm4.36 2.17c0-.56.09-1.06.27-1.51s.41-.83.71-1.14c.29-.3.63-.54 1.01-.71.39-.17.78-.25 1.18-.25.47 0 .88.08 1.23.24.36.16.65.38.89.67s.42.63.54 1.03c.12.41.18.84.18 1.32 0 .32-.02.57-.07.76h-4.37c.08.62.29 1.1.65 1.44.36.33.82.5 1.38.5.3 0 .58-.04.84-.13.25-.09.51-.21.76-.37l.54 1.01c-.32.21-.69.39-1.09.53s-.82.21-1.26.21c-.47 0-.92-.08-1.33-.25-.41-.16-.77-.4-1.08-.7-.3-.31-.54-.69-.72-1.13-.17-.44-.26-.95-.26-1.52zm4.61-.62c0-.55-.11-.98-.34-1.28-.23-.31-.58-.47-1.06-.47-.41 0-.77.15-1.08.45-.31.29-.5.73-.57 1.3zm3.01 2.23c.31.24.61.43.92.57.3.13.63.2.98.2.38 0 .65-.08.83-.23s.27-.35.27-.6c0-.14-.05-.26-.13-.37-.08-.1-.2-.2-.34-.28-.14-.09-.29-.16-.47-.23l-.53-.22c-.23-.09-.46-.18-.69-.3-.23-.11-.44-.24-.62-.4s-.33-.35-.45-.55c-.12-.21-.18-.46-.18-.75 0-.61.23-1.1.68-1.49.44-.38 1.06-.57 1.83-.57.48 0 .91.08 1.29.25s.71.36.99.57l-.74.98c-.24-.17-.49-.32-.73-.42-.25-.11-.51-.16-.78-.16-.35 0-.6.07-.76.21-.17.15-.25.33-.25.54 0 .14.04.26.12.36s.18.18.31.26c.14.07.29.14.46.21l.54.19c.23.09.47.18.7.29s.44.24.64.4c.19.16.34.35.46.58.11.23.17.5.17.82 0 .3-.06.58-.17.83-.12.26-.29.48-.51.68-.23.19-.51.34-.84.45-.34.11-.72.17-1.15.17-.48 0-.95-.09-1.41-.27-.46-.19-.86-.41-1.2-.68z" fill="#535353"/></g></svg>\"><\/a><\/p>\n<div>\n<h3 id=\"citeas\">Cite this article<\/h3>\n<p> Computational framework decomposes and annotates single-cell and spatial omics.<br \/>\n                    <i>Nat Biotechnol<\/i>  (2023). https:\/\/doi.org\/10.1038\/s41587-023-01658-2<\/p>\n<p><a data-test=\"citation-link\" data-track=\"click\" data-track-action=\"download article citation\" data-track-label=\"link\" data-track-external rel=\"nofollow\" href=\"https:\/\/citation-needed.springer.com\/v2\/references\/10.1038\/s41587-023-01658-2?format=refman&#038;flavour=citation\">Download citation<\/a><\/p>\n<ul data-test=\"publication-history\">\n<li>\n<p>Published<span>: <\/span><span><time datetime=\"2023-02-16\">16 February 2023<\/time><\/span><\/p>\n<\/li>\n<li>\n<p><abbr title=\"Digital Object Identifier\">DOI<\/abbr><span>: <\/span><span>https:\/\/doi.org\/10.1038\/s41587-023-01658-2<\/span><\/p>\n<\/li>\n<\/ul>\n<\/div>\n<\/div>\n<\/div><\/div>\n<\/p><\/div>\n<p><a href=\"https:\/\/www.nature.com\/articles\/s41587-023-01658-2\" class=\"button purchase\" rel=\"nofollow noopener\" target=\"_blank\">Read More<\/a><br \/>\n Joan Lupo<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Research Briefing Published: 16 February 2023 Nature Biotechnology (2023)Cite this article Subjects We developed TACCO, a versatile and efficient computational annotation framework, leveraging growing single-cell and spatial omics data to identify cell types and states, decipher molecular and cellular tissue structure, and resolve differentiation trajectories. This is a preview of subscription content, access via your<\/p>\n","protected":false},"author":1,"featured_media":608718,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[46592,30255,536],"tags":[],"class_list":{"0":"post-608717","1":"post","2":"type-post","3":"status-publish","4":"format-standard","5":"has-post-thumbnail","7":"category-computational","8":"category-framework","9":"category-science-nature"},"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/newsycanuse.com\/index.php\/wp-json\/wp\/v2\/posts\/608717","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/newsycanuse.com\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/newsycanuse.com\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/newsycanuse.com\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/newsycanuse.com\/index.php\/wp-json\/wp\/v2\/comments?post=608717"}],"version-history":[{"count":0,"href":"https:\/\/newsycanuse.com\/index.php\/wp-json\/wp\/v2\/posts\/608717\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/newsycanuse.com\/index.php\/wp-json\/wp\/v2\/media\/608718"}],"wp:attachment":[{"href":"https:\/\/newsycanuse.com\/index.php\/wp-json\/wp\/v2\/media?parent=608717"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/newsycanuse.com\/index.php\/wp-json\/wp\/v2\/categories?post=608717"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/newsycanuse.com\/index.php\/wp-json\/wp\/v2\/tags?post=608717"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}